compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

Dependency Tree

• org.cateproject:cate-web:war
  • aspectj:aspectjweaver:jar
  • aspectj:aspectjrt:jar
  • org.cateproject:cate-service:jar
    • com.thoughtworks.xstream:xstream:jar
      • xpp3:xpp3_min:jar
    • org.springframework.ws:spring-oxm-tiger:jar
      • org.springframework.ws:spring-xml:jar
      • org.springframework.ws:spring-oxm:jar
      • stax:stax-api:jar
    • com.ibm.lsid:lsid-server:jar
    • org.cateproject:cate-persistence:jar
      • javax.xml.ws:jaxws-api:jar
        • javax.xml.bind:jaxb-api:jar
          • javax.xml.stream:stax-api:jar
        • javax.xml.soap:saaj-api:jar
        • javax.annotation:jsr250-api:jar
        • javax.jws:jsr181-api:jar
      • commons-discovery:commons-discovery:jar
      • javax.mail:mail:jar
      • org.apache.axis:axis:jar
      • org.unitils:unitils:jar
        • javax.transaction:jta:jar
      • org.cateproject:cate-model:jar
        • aspectj:aspectjlib:jar
        • com.sun.xml.bind:jaxb-impl:jar
        • org.jbpm:jbpm:jar
        • org.hibernate:hibernate-annotations:jar
          • org.hibernate:hibernate-commons-annotations:jar
          • org.hibernate:ejb3-persistence:jar
        • org.hibernate:hibernate:jar
          • asm:asm-attrs:jar
          • cglib:cglib:jar
          • asm:asm:jar
        • mysql:mysql-connector-java:jar
        • org.hibernate:hibernate-search:jar
        • com.sun.xml.bind:jaxb1-impl:jar
        • joda-time:joda-time:jar
        • javax.xml.bind:jsr173_api:jar
        • xml-resolver:xml-resolver:jar
        • joda-time:joda-time-hibernate:jar
        • wsdl4j:wsdl4j:jar
        • org.dbunit:dbunit:jar
          • junit-addons:junit-addons:jar
          • poi:poi:jar
      • javax.xml:jaxrpc-api:jar
      • org.apache.axis:axis-jaxrpc:jar
      • javax.activation:activation:jar
      • org.apache.lucene:lucene-spellchecker:jar
      • net.sf.beanlib:beanlib-hibernate:jar
        • net.sf.beanlib:beanlib:jar
          • xstream:xstream:jar
        • org.springframework:spring:jar
    • org.springmodules:spring-modules-jbpm31:jar
      • antlr:antlr:jar
      • dom4j:dom4j:jar
      • bsh:bsh:jar
      • cglib:cglib-nodep:jar
      • jboss:jbpm:jar
  • org.cateproject:cate-view:jar
    • org.apache.velocity:velocity-tools:jar
      • commons-beanutils:commons-beanutils:jar
      • commons-validator:commons-validator:jar
        • commons-digester:commons-digester:jar
      • sslext:sslext:jar
    • org.apache.tiles:tiles-jsp:jar
      • commons-logging:commons-logging-api:jar
    • net.sf.json-lib:json-lib:jar
      • net.sf.ezmorph:ezmorph:jar
    • velocity:velocity:jar
    • org.springmodules:spring-modules-cache:jar
      • log4j:log4j:jar
      • commons-lang:commons-lang:jar
      • concurrent:concurrent:jar
    • org.springframework:spring-webmvc:jar
      • org.springframework:spring-context-support:jar
    • javax.servlet:servlet-api:jar
    • com.ibm.lsid:lsid-client:jar
    • org.apache.tiles:tiles-api:jar
    • org.apache.tiles:tiles-core:jar
    • org.springframework.security:spring-security-taglibs:jar
      • org.springframework.security:spring-security-core:jar
        • commons-codec:commons-codec:jar
      • org.springframework.security:spring-security-acl:jar
    • javax.servlet:jsp-api:jar
  • org.cateproject:cate-controller:jar
    • org.apache.lucene:lucene-highlighter:jar
      • org.apache.lucene:lucene-core:jar
    • org.apache.maven.doxia:doxia-core:jar
      • oro:oro:jar
      • org.apache.maven.doxia:doxia-sink-api:jar
      • org.codehaus.plexus:plexus-utils:jar
      • org.codehaus.plexus:plexus-container-default:jar
        • classworlds:classworlds:jar
    • org.solinger.cracklib:cracklib:jar
    • org.owasp:antisamy:jar
      • nekohtml:nekohtml:jar
      • batik:batik-util:jar
      • batik:batik-css:jar
      • xml-apis:xml-apis-ext:jar
    • com.octo.captcha:jcaptcha-all:jar
      • quartz:quartz:jar
      • commons-dbcp:commons-dbcp:jar
        • xml-apis:xml-apis:jar
      • commons-pool:commons-pool:jar
      • hsqldb:hsqldb:jar
      • net.sf.ehcache:ehcache:jar
      • xerces:xercesImpl:jar
      • xerces:xmlParserAPIs:jar
    • org.springframework:spring-webflow:jar
      • ognl:ognl:jar
      • org.springframework:spring-binding:jar
        • commons-logging:commons-logging:jar
        • org.springframework:spring-beans:jar
      • org.springframework:spring-context:jar
      • org.springframework:spring-core:jar
      • org.springframework:spring-web:jar
    • org.apache.lucene:lucene-demos:jar
  • commons-collections:commons-collections:jar
  • taglibs:standard:jar
  • javax.servlet:jstl:jar

Dependency Listings

CATE Web Interface

Creating a Taxonomic e-Science (CATE)

../../www.cate-project.org/cate-web

AspectJ weaver

http://www.aspectj.org

AspectJ runtime

http://www.aspectj.org

CATE Service Layer

Creating a Taxonomic e-Science (CATE)

../../www.cate-project.org/cate-service

XStream Core

Unnamed - xpp3:xpp3_min:jar:1.1.3.4.O

MXP1 is a stable XmlPull parsing engine that is based on ideas from XPP and in particular XPP2 but completely revised and rewritten to take the best advantage of latest JIT JVMs such as Hotspot in JDK 1.4+.

http://www.extreme.indiana.edu/xgws/xsoap/xpp/mxp1/

Spring O/X Mapping - Java 5

Spring Web Services is a product of the Spring community focused on creating document-driven Web services. It aims to facilitate contract-first SOAP service development, allowing for the creation of flexible web services using one of the many ways to manipulate XML payloads.

http://static.springframework.org/spring-ws/site/spring-oxm-tiger

Spring XML

Various XML support classes for Spring Web Services

http://static.springframework.org/spring-ws/site/spring-xml

Spring O/X Mapping

Spring Object/XML Mapping abstraction

http://static.springframework.org/spring-ws/site/spring-oxm

StAX API

StAX API is the standard java XML processing API defined by JSR-173

http://stax.codehaus.org/

Unnamed - com.ibm.lsid:lsid-server:pom:1.1.2

CATE Persistence Layer

Creating a Taxonomic e-Science (CATE)

../../www.cate-project.org/cate-persistence

Unnamed - javax.xml.ws:jaxws-api:jar:2.1

Unnamed - javax.xml.bind:jaxb-api:jar:2.1

Unnamed - javax.xml.stream:stax-api:jar:1.0-2

SOAP with Attachments API Package

http://java.sun.com/webservices/saaj/index.jsp

Unnamed - javax.annotation:jsr250-api:jar:1.0

Unnamed - javax.jws:jsr181-api:jar:1.0-MR1

Discovery

Commons Discovery

http://jakarta.apache.org/commons/${pom.artifactId.substring(8)}/

JavaMail API

The JavaMail API provides a platform-independent and protocol-independent framework to build mail and messaging applications.

https://glassfish.dev.java.net/javaee5/mail/

Unnamed - org.apache.axis:axis:jar:1.4

POM was created from deploy:deploy-file

Unitils

Unitils provides utilities to further simplify unit-testing with JUnit, DBUnit, EasyMock Hibernate and Spring. The goal is to make unit-testing easy and maintainable by offering utilities such as automatic DB-schema maintainance and equality assertion through reflection.

http://unitils.sourceforge.net/

Java Transaction API

The javax.transaction package. It is appropriate for inclusion in a classpath, and may be added to a Java 2 installation.

http://java.sun.com/products/jta

CATE Data Model

Creating a Taxonomic e-Science (CATE)

../../www.cate-project.org/cate-model

AspectJ lib

http://www.aspectj.org

Unnamed - com.sun.xml.bind:jaxb-impl:jar:2.1

Unnamed - org.jbpm:jbpm:pom:3.1.4

Hibernate Annotations

Annotations metadata for Hibernate

http://annotations.hibernate.org

Hibernate Commons Annotations

Hibernate Commons Annotations is a utility project used by annotations based Hibernate sub-projects.

Java Persistence API

Java Persistence API

http://www.hibernate.org

Hibernate

Relational Persistence for Java

http://www.hibernate.org

asm-attrs

http://asm.objectweb.org/

cglib

http://cglib.sourceforge.net/

asm

http://asm.objectweb.org/

MySQL java connector

MySQL java connector

http://dev.mysql.com/usingmysql/java/

Unnamed - org.hibernate:hibernate-search:jar:3.0.1.GA

Hibernate Search

Unnamed - com.sun.xml.bind:jaxb1-impl:jar:2.1

Joda time

Date and time library to replace JDK date handling.

http://joda-time.sourceforge.net

Unnamed - javax.xml.bind:jsr173_api:jar:1.0

XML Commons Resolver Component

xml-commons provides an Apache-hosted set of DOM, SAX, and JAXP interfaces for use in other xml-based projects. Our hope is that we can standardize on both a common version and packaging scheme for these critical XML standards interfaces to make the lives of both our developers and users easier.

http://xml.apache.org/commons/components/resolver/

Unnamed - joda-time:joda-time-hibernate:pom:1.0-SNAPSHOT

WSDL4J

Java stub generator for WSDL

http://sf.net/projects/wsdl4j

DbUnit Framework

DbUnit is a JUnit extension (also usable from Ant) targeted for database-driven projects that, among other things, puts your database into a known state between test runs. This is an excellent way to avoid the myriad of problems that can occur when one test case corrupts the database and causes subsequent tests to fail or exacerbate the damage.

http://dbunit.sourceforge.net

Unnamed - junit-addons:junit-addons:jar:1.4

Unnamed - poi:poi:jar:2.5.1-final-20040804

Java API for XML Based RPC

Part of the Java Web Services Developer Pack 1.6

http://java.sun.com/webservices/jaxrpc/index.jsp

Unnamed - org.apache.axis:axis-jaxrpc:jar:1.4

POM was created from deploy:deploy-file

JavaBeans Activation Framework (JAF)

JavaBeans Activation Framework (JAF) is a standard extension to the Java platform that lets you take advantage of standard services to: determine the type of an arbitrary piece of data; encapsulate access to it; discover the operations available on it; and instantiate the appropriate bean to perform the operation(s).

http://java.sun.com/products/javabeans/jaf/index.jsp

Lucene Spellchecker

Spell Checker

http://lucene.apache.org/java/lucene-contrib/lucene-spellchecker

Java Bean Library for Hibernate

Particularly handy when used with Hibernate. It allows developers to easily reuse the same pojo classes for both persistence instances and data transfer objects.

http://beanlib.sourceforge.net/

Java Bean Library

Java Bean Utilities Library

http://beanlib.sourceforge.net/

Unnamed - xstream:xstream:jar:1.1.3

Spring Framework

Spring Framework

http://www.springframework.org

spring-modules-jbpm31

https://springmodules.dev.java.net/

Unnamed - antlr:antlr:jar:2.7.5

dom4j

dom4j: the flexible XML framework for Java

http://dom4j.org

Unnamed - bsh:bsh:jar:2.0b1

cglib

http://cglib.sourceforge.net/

Unnamed - jboss:jbpm:pom:3.1.4

CATE View Component

Creating a Taxonomic e-Science (CATE)

../../www.cate-project.org/cate-view

VelocityTools

VelocityTools is an integrated collection of Velocity subprojects with the common goal of creating tools and infrastructure to speed and ease development of both web and non-web applications using the Velocity template engine.

http://jakarta.apache.org/velocity/tools/

Unnamed - commons-beanutils:commons-beanutils:jar:1.7.0

Validator

Commons Validator provides the building blocks for both client side validation and server side data validation. It may be used standalone or with a framework like Struts.

http://jakarta.apache.org/commons/${pom.artifactId.substring(8)}/

Digester

The Digester package lets you configure an XML->Java object mapping module which triggers certain actions called rules whenever a particular pattern of nested XML elements is recognized.

http://jakarta.apache.org/commons/digester/

sslext

Tiles - JSP support

Tiles JSP support: Classes and tag libraries to use Tiles in a JSP environment.

http://tiles.apache.org/framework/tiles-jsp

Logging

Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems.

http://jakarta.apache.org/commons/logging/

json-lib

Java library for transforming beans, maps, collections, java arrays and XML to JSON.

http://json-lib.sourceforge.net

ezmorph

Simple java library for transforming an Object to another Object.

http://ezmorph.sourceforge.net

Apache Velocity

Apache Velocity is a general purpose template engine.

http://velocity.apache.org/engine/releases/velocity-1.5/

spring-modules-cache

The Caching Module provides a consistent abstraction for performing caching, providing a consistent programming model across different caching APIs such as EHCache, JBoss Cache, Java Caching System (JCS) and OSCache.

https://springmodules.dev.java.net/

Unnamed - log4j:log4j:jar:1.2.8

Lang

Commons.Lang, a package of Java utility classes for the classes that are in java.lang's hierarchy, or are considered to be so standard as to justify existence in java.lang.

http://jakarta.apache.org/commons/lang/

Dough Lea's util.concurrent package

Spring Framework: Web MVC

Spring Framework: Web MVC

http://www.springframework.org

Spring Framework: Context Support

Spring Framework: Context Support

http://www.springframework.org

Unnamed - javax.servlet:servlet-api:jar:2.4

Unnamed - com.ibm.lsid:lsid-client:pom:1.1.2

Tiles - API

Tiles APIs, containing interfaces and classes to interact with Tiles.

http://tiles.apache.org/framework/tiles-api

Tiles - Core Library

Tiles Core Library, including basic implementation of the APIs.

http://tiles.apache.org/framework/tiles-core

Spring Security - JSP taglibs

Spring Security

http://static.springframework.org/spring-security/site/index.html/spring-security-taglibs

Spring Security - Core

Spring Security

http://static.springframework.org/spring-security/site/index.html/spring-security-core

Codec

The codec package contains simple encoder and decoders for various formats such as Base64 and Hexadecimal. In addition to these widely used encoders and decoders, the codec package also maintains a collection of phonetic encoding utilities.

http://jakarta.apache.org/commons/codec/

Spring Security - ACL module

Spring Security

http://static.springframework.org/spring-security/site/index.html/spring-security-acl

Unnamed - javax.servlet:jsp-api:jar:2.0

CATE Web Controller

Creating a Taxonomic e-Science (CATE)

../../www.cate-project.org/cate-controller

Lucene Highlighter

This is the highlighter for apache lucene java

http://lucene.apache.org/java/lucene-contrib/lucene-highlighter

Lucene Core

Apache Lucene Java Core

http://lucene.apache.org/java/lucene-core

Doxia Core

Maven is a software project management and comprehension tool. Based on the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a central piece of information.

http://maven.apache.org/doxia/doxia-core

Unnamed - oro:oro:jar:2.0.8

Doxia Sink API

Maven is a software project management and comprehension tool. Based on the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a central piece of information.

http://maven.apache.org/doxia/doxia-sink-api

Plexus Common Utilities

Default Plexus Container

classworlds

http://classworlds.codehaus.org/

cracklib

http://maven.apache.org

Unnamed - org.owasp:antisamy:jar:1.1.1

Neko HTML

http://nekohtml.sourceforge.net/

Batik Utilities

Batik Utilities

Batik CSS

Batik CSS

XML Commons External Components XML APIs Extensions

xml-commons provides an Apache-hosted set of DOM, SAX, and JAXP interfaces for use in other xml-based projects. Our hope is that we can standardize on both a common version and packaging scheme for these critical XML standards interfaces to make the lives of both our developers and users easier. The External Components portion of xml-commons contains interfaces that are defined by external standards organizations. For DOM, that's the W3C; for SAX it's David Megginson and sax.sourceforge.net; for JAXP it's Sun.

http://xml.apache.org/commons/components/external/

jcaptcha-all

http://www.jcaptcha.net/

Unnamed - quartz:quartz:jar:1.5.1

Commons DBCP

Commons Database Connection Pooling

http://jakarta.apache.org/commons/dbcp/

Unnamed - xml-apis:xml-apis:jar:1.3.03

The Apache Software Foundation provides support for the Apache community of open-source software projects. The Apache projects are characterized by a collaborative, consensus based development process, an open and pragmatic software license, and a desire to create high quality software that leads the way in its field. We consider ourselves not simply a group of projects sharing a server, but rather a community of developers and users.

http://xml.apache.org/commons/#external

Commons Pool

Commons Object Pooling Library

http://jakarta.apache.org/commons/${pom.artifactId.substring(8)}/

Unnamed - hsqldb:hsqldb:jar:1.7.3.3

ehcache

Ehcache is a widely used pure Java, distributed in-process cache

http://ehcache.sf.net

Xerces2 Java Parser

Xerces2 is the next generation of high performance, fully compliant XML parsers in the Apache Xerces family. This new version of Xerces introduces the Xerces Native Interface (XNI), a complete framework for building parser components and configurations that is extremely modular and easy to program.

http://xerces.apache.org/xerces2-j/

Unnamed - xerces:xmlParserAPIs:jar:2.2.1

Spring Web Flow

Spring Web Flow

http://www.springframework.org

OGNL

OGNL stands for Object-Graph Navigation Language; it is an expression language for getting and setting properties of Java objects.

http://www.ognl.org/

Spring Binding

Spring Data Binding Framework

http://www.springframework.org

Commons Logging

Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems.

http://commons.apache.org/logging

Spring Framework: Beans

Spring Framework: Beans

http://www.springframework.org

Spring Framework: Context

Spring Framework: Context

http://www.springframework.org

Spring Framework: Core

Spring Framework: Core

http://www.springframework.org

Spring Framework: Web

Spring Framework: Web

http://www.springframework.org

Lucene Demos

This is the demo for Apache Lucene Java

http://lucene.apache.org/java/lucene-demos

Collections

Types that extend and augment the Java Collections Framework.

http://jakarta.apache.org/commons/collections/

Unnamed - taglibs:standard:jar:1.1.2

Unnamed - javax.servlet:jstl:jar:1.1.2